PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0108s0230.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 427aa    MW: 48004.8 Da    PI: 4.6481
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0108s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.1e-35831742102
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Flkk++e++ed+e++e++swsen +sf+v+++++f+k++LpkyFkhsnf+SF+RQLn+YgFkk++ ++         weF+++ F+ 
  SapurV1A.0108s0230.1.p  83 FLKKTFEMVEDPETDETVSWSENRDSFIVWESHDFSKNLLPKYFKHSNFSSFIRQLNTYGFKKIDPDR---------WEFANEGFHG 160
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkks 102
                             gkk+ll++ikr+++
  SapurV1A.0108s0230.1.p 161 GKKHLLKSIKRRSR 174
                             ***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.2E-3776167IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.9E-5479172IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.94E-3379172IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-1883106IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.7E-3183172IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-18121133IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340122146IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-18134146IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MNTREMQKAA AVLEVEEEKK IKATAVTVKE EVDDDGVDSL NELKGGEGGG NNKNDNGISS  60
SSCSSLDLPK PMEGLQEAGP PPFLKKTFEM VEDPETDETV SWSENRDSFI VWESHDFSKN  120
LLPKYFKHSN FSSFIRQLNT YGFKKIDPDR WEFANEGFHG GKKHLLKSIK RRSRYNKQQS  180
GPVTGVNDST KPGLEAELEI LKDDQDDLRL EILKMRQQQQ ESQTQLSAVE ERIQAAECKQ  240
LQMFIFCTKA SSSPGFIQQL IQKRKQQGKL DGIEFCKKRR LLQTHLPESF RDAADTNQGV  300
NCRNHAREQQ ATMRTELSEI LTEDVETCQI SKVFPAPLSD EFCCPILQDH NANIMCETNT  360
QAAYNLMSER LLDDGSVIED LVDEEVDVND SKLYLELEDL IGMPRTWGGF ATELVGHPAG  420
CVGSIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-226417210129Heat shock factor protein 1
5d5v_B5e-226417210129Heat shock factor protein 1
5d5v_D5e-226417210129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165171LKSIKRR
2262279KRKQQGKLDGIEFCKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140030.0KP014003.1 Populus simonii heat shock transcription factor A9 (HsfA9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309214.20.0hypothetical protein POPTR_0006s15050g
SwissprotO809822e-82HSFA2_ARATH; Heat stress transcription factor A-2
TrEMBLB9HDY20.0B9HDY2_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-78heat shock transcription factor A2